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Caiaphas wanted to kill Jesus, and he prophesied that they should, but his prophecy was from God. It really was better for one man to die than that they the whole world should perish into eternal damnation. Caiaphas prophesied it for his own wicked intent, because he did not believe in Jesus, but yet his prophesy was still from God, and God used it as Part of His great triumph over wickedness.